Summary of Gene (AT1G32460)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G32460 5'->3' (+) Promoter sequence AT1G32490.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 11738182 | -677 |
TSS clone | G | clone | + | 11738201 | -658 |
TSS clone peak | A | clone | + | 11738204 | -655 |
TSS clone | T | clone | + | 11738237 | -622 |
TSS clone | A | clone | + | 11738242 | -617 |
TSS clone | T | clone | + | 11738243 | -616 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTCTTCTTCCTCT | + | 11738301 | 11738315 | -558 | -544 |
Y Patch | TTTCTTCTCT | + | 11738326 | 11738335 | -533 | -524 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGTGTGA | + | 11738125 | 11738132 | -734 | -727 | |||
AtREG588 | ACGTGTGA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |