PlantPromoterDB promoter information of AT1G32560

Summary of Gene (AT1G32560)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G32560 TAIR NCBI
Gene model	AT1G32560
Description	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryonic development ending in seed dormancy, embryonic development; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant (LEA) group 1 (InterPro:IPR005513); BEST Arabidopsis thaliana protein match is: late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein (TAIR:AT2G35300.1); Has 190 Blast hits to 190 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 11773528-11774727)

`Genome position from initiation codon` `AT1G32560.1 TSS from cDNA TSS information AT1G32560 5'->3' (+) Promoter sequence AT1G32550.1 AT1G32550.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G32560

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone + 11774485 -43

TSS clone peak G clone + 11774489 -39

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	+	11774485	-43
TSS clone peak	`G`	clone	+	11774489	-39

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ATAAACCGGAAA + 11774225 11774236 -303 -292

AtREG598 ATAAACCG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   AAACCGGA   PPDB Motif AACCG(G/A) PLACE Motif

AtREG534    AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

AtREG644     ACCGGAAA PPDB Motif AACCG(G/A) PLACE Motif

REG TTTCCGGTTTAC + 11774252 11774263 -276 -265

AtREG644 TTTCCGGT     PPDB Motif AACCG(G/A) PLACE Motif

AtREG534 TTCCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   TCCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412    CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG519     CGGTTTAC PPDB Motif AACCG(G/A) PLACE Motif

REG ATTAGGCC + 11774319 11774326 -209 -202

AtREG506 ATTAGGCC PPDB Motif PLACE Motif

REG CTACGTGGCAA + 11774339 11774349 -189 -179

AtREG495 CTACGTGG    PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG413 TACGTGGC   PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG379   ACGTGGCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG452    CGTGGCAA PPDB Motif PLACE Motif GCCAC

REG AGACACGTGGCGA + 11774377 11774389 -151 -139

AtREG470 AGACACGT      ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG366 GACACGTG     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG382   ACACGTGG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG367    CACGTGGC   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC

AtREG371     ACGTGGCG ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG471      CGTGGCGA ABA PPDB Motif PLACE Motif GCCAC

REG AACACGTGGAA + 11774397 11774407 -131 -121

AtREG590 AACACGTG    ABA, JA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG382 ACACGTGG   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG408   CACGTGGA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG627    ACGTGGAA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ATAAACCGGAAA`		+	11774225	11774236	-303	-292
	AtREG598	`ATAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`TAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG521	`AAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG534	`AACCGGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG644	`ACCGGAAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TTTCCGGTTTAC`		+	11774252	11774263	-276	-265
	AtREG644	`TTTCCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG534	`TTCCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG521	`TCCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`CCGGTTTA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG519	`CGGTTTAC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`ATTAGGCC`		+	11774319	11774326	-209	-202
	AtREG506	`ATTAGGCC`		PPDB Motif		PLACE Motif
REG	`CTACGTGGCAA`		+	11774339	11774349	-189	-179
	AtREG495	`CTACGTGG`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG413	`TACGTGGC`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
	AtREG379	`ACGTGGCA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
	AtREG452	`CGTGGCAA`		PPDB Motif		PLACE Motif	`GCCAC`
REG	`AGACACGTGGCGA`		+	11774377	11774389	-151	-139
	AtREG470	`AGACACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
	AtREG366	`GACACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC`
	AtREG382	`ACACGTGG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG367	`CACGTGGC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC`
	AtREG371	`ACGTGGCG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
	AtREG471	`CGTGGCGA`	ABA	PPDB Motif		PLACE Motif	`GCCAC`
REG	`AACACGTGGAA`		+	11774397	11774407	-131	-121
	AtREG590	`AACACGTG`	ABA, JA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG382	`ACACGTGG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG408	`CACGTGGA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG627	`ACGTGGAA`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 13 - 11774187 AT1G32550.1, AT1G32550.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	13	-	11774187	AT1G32550.1, AT1G32550.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone C clone - 11774180 AT1G32550.1, AT1G32550.2

TSS clone T clone - 11774175 AT1G32550.1, AT1G32550.2

TSS clone A clone - 11774163 AT1G32550.1, AT1G32550.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`C`	clone	-	11774180	AT1G32550.1, AT1G32550.2
TSS clone	`T`	clone	-	11774175	AT1G32550.1, AT1G32550.2
TSS clone	`A`	clone	-	11774163	AT1G32550.1, AT1G32550.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTTC - 11774165 11774172 AT1G32550.1, AT1G32550.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTTC`	-	11774165	11774172	AT1G32550.1, AT1G32550.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTTCCGGTTT - 11774227 11774236 AT1G32550.1, AT1G32550.2

AtREG644 TTTCCGGT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG534 TTCCGGTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   TCCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

REG GTAAACCGGAAA - 11774252 11774263 AT1G32550.1, AT1G32550.2

AtREG519 GTAAACCG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   AAACCGGA   PPDB Motif AACCG(G/A) PLACE Motif

AtREG534    AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

AtREG644     ACCGGAAA PPDB Motif AACCG(G/A) PLACE Motif

REG GGCCTAAT - 11774319 11774326 AT1G32550.1, AT1G32550.2

AtREG506 GGCCTAAT PPDB Motif PLACE Motif

REG TTGCCACGTAG - 11774339 11774349 AT1G32550.1, AT1G32550.2

AtREG452 TTGCCACG    PPDB Motif PLACE Motif GCCAC

AtREG379 TGCCACGT   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG413   GCCACGTA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG495    CCACGTAG PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG TCGCCACGTGTCT - 11774377 11774389 AT1G32550.1, AT1G32550.2

AtREG471 TCGCCACG      ABA PPDB Motif PLACE Motif GCCAC

AtREG371 CGCCACGT     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG367   GCCACGTG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC

AtREG382    CCACGTGT   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG366     CACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG470      ACGTGTCT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG TTCCACGTGTT - 11774397 11774407 AT1G32550.1, AT1G32550.2

AtREG627 TTCCACGT    PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG408 TCCACGTG   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG382   CCACGTGT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG590    CACGTGTT ABA, JA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG