PlantPromoterDB promoter information of AT1G33030

Summary of Gene (AT1G33030)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G33030 TAIR NCBI
Gene model	AT1G33030
Description	O-methyltransferase family 2 protein; FUNCTIONS IN: O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: cytosol; EXPRESSED IN: stem, stamen, leaf; EXPRESSED DURING: 4 anthesis, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: ATOMT1 (O-METHYLTRANSFERASE 1); caffeate O-methyltransferase/ myricetin 3'-O-methyltransferase/ quercetin 3-O-methyltransferase (TAIR:AT5G54160.1); Has 2066 Blast hits to 2064 proteins in 423 species: Archae - 0; Bacteria - 584; Metazoa - 76; Fungi - 395; Plants - 923; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 11967212-11966013)

`Genome position from initiation codon` `AT1G33030.1 TSS from cDNA TSS information AT1G33030 5'->3' (-) Promoter sequence AT1G33040.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G33030

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak G clone - 11966276 -64

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`G`	clone	-	11966276	-64

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TAAAAGCCCATTGGGCCTCA - 11966398 11966417 -186 -205

AtREG549 TAAAAGCC             PPDB Motif PLACE Motif

AtREG409 AAAAGCCC            PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA           PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    AAGCCCAT          PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372     AGCCCATT         PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG551      GCCCATTG        PPDB Motif GCCCA PLACE Motif

AtREG461         CATTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG352          ATTGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356           TTGGGCCT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG447            TGGGCCTC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG587             GGGCCTCA PPDB Motif GCCCA PLACE Motif GGGCC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TAAAAGCCCATTGGGCCTCA`		-	11966398	11966417	-186	-205
	AtREG549	`TAAAAGCC`		PPDB Motif		PLACE Motif
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG372	`AGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG551	`GCCCATTG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG461	`CATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG447	`TGGGCCTC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG587	`GGGCCTCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone C clone + 11966500 AT1G33040.1

TSS clone A clone + 11966510 AT1G33040.1

TSS clone G clone + 11966511 AT1G33040.1

TSS clone T clone + 11966515 AT1G33040.1

TSS clone G clone + 11966517 AT1G33040.1

TSS clone peak C clone + 11966518 AT1G33040.1

TSS clone G clone + 11966536 AT1G33040.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`C`	clone	+	11966500	AT1G33040.1
TSS clone	`A`	clone	+	11966510	AT1G33040.1
TSS clone	`G`	clone	+	11966511	AT1G33040.1
TSS clone	`T`	clone	+	11966515	AT1G33040.1
TSS clone	`G`	clone	+	11966517	AT1G33040.1
TSS clone peak	`C`	clone	+	11966518	AT1G33040.1
TSS clone	`G`	clone	+	11966536	AT1G33040.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TGAGGCCCAATGGGCTTTTA + 11966398 11966417 AT1G33040.1

AtREG587 TGAGGCCC             PPDB Motif GCCCA PLACE Motif GGGCC

AtREG447 GAGGCCCA            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   AGGCCCAA           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352    GGCCCAAT          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG461     GCCCAATG         PPDB Motif GCCCA PLACE Motif

AtREG551        CAATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG372         AATGGGCT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378          ATGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376           TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409            GGGCTTTT PPDB Motif GCCCA PLACE Motif

AtREG549             GGCTTTTA PPDB Motif PLACE Motif