PlantPromoterDB promoter information of AT1G33490.1

Summary of Gene (AT1G33490.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G33490 TAIR NCBI
Gene model	AT1G33490.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10140.1); Has 42 Blast hits to 42 proteins in 15 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 12153276-12152077)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G33490.1 5'->3' (-) Promoter sequence AT1G33500.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G33490.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 31 - 12152378 -102

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	31	-	12152378	-102

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 12152394 -118

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	12152394	-118

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AACCCGGTTCGG - 12152431 12152442 -155 -166

AtREG516 AACCCGGT     PPDB Motif PLACE Motif

AtREG455 ACCCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG423    CCGGTTCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG456     CGGTTCGG PPDB Motif AACCG(G/A) PLACE Motif

REG TAAAAGCCCATTAT - 12152466 12152479 -190 -203

AtREG549 TAAAAGCC       PPDB Motif PLACE Motif

AtREG409 AAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    AAGCCCAT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372     AGCCCATT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG357      GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG546       CCCATTAT PPDB Motif PLACE Motif

REG ATAAAGCCCAATTA - 12152490 12152503 -214 -227

AtREG601 ATAAAGCC       PPDB Motif PLACE Motif

AtREG365 TAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402     AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG418      GCCCAATT PPDB Motif GCCCA PLACE Motif

AtREG600       CCCAATTA PPDB Motif GCCCA PLACE Motif

REG ACCGGGTCGACCCGGTTTAG - 12152517 12152536 -241 -260

AtREG463 ACCGGGTCGACCCGGT     PPDB Motif AACCG(G/A), GGGACCC PLACE Motif

AtREG494 CCGGGTCGACCCGG      PPDB Motif PLACE Motif

AtREG539   CGGGTCGACCCG       PPDB Motif PLACE Motif

AtREG455          ACCCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG412            CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG511             CGGTTTAG PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AACCCGGTTCGG`		-	12152431	12152442	-155	-166
	AtREG516	`AACCCGGT`		PPDB Motif		PLACE Motif
	AtREG455	`ACCCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG423	`CCGGTTCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG456	`CGGTTCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TAAAAGCCCATTAT`		-	12152466	12152479	-190	-203
	AtREG549	`TAAAAGCC`		PPDB Motif		PLACE Motif
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG372	`AGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG357	`GCCCATTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG546	`CCCATTAT`		PPDB Motif		PLACE Motif
REG	`ATAAAGCCCAATTA`		-	12152490	12152503	-214	-227
	AtREG601	`ATAAAGCC`		PPDB Motif		PLACE Motif
	AtREG365	`TAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG402	`AGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG418	`GCCCAATT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG600	`CCCAATTA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ACCGGGTCGACCCGGTTTAG`		-	12152517	12152536	-241	-260
	AtREG463	`ACCGGGTCGACCCGGT`		PPDB Motif	`AACCG(G/A), GGGACCC`	PLACE Motif
	AtREG494	`CCGGGTCGACCCGG`		PPDB Motif		PLACE Motif
	AtREG539	`CGGGTCGACCCG`		PPDB Motif		PLACE Motif
	AtREG455	`ACCCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`CCGGTTTA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG511	`CGGTTTAG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 4 + 12152601 AT1G33500.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	4	+	12152601	AT1G33500.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTTCTTCT + 12152552 12152559 AT1G33500.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTTCTTCT`	+	12152552	12152559	AT1G33500.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CCGAACCGGGTT + 12152431 12152442 AT1G33500.1

AtREG456 CCGAACCG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG423 CGAACCGG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG455    AACCGGGT PPDB Motif AACCG(G/A) PLACE Motif

AtREG516     ACCGGGTT PPDB Motif PLACE Motif

REG ATAATGGGCTTTTA + 12152466 12152479 AT1G33500.1

AtREG546 ATAATGGG       PPDB Motif PLACE Motif

AtREG357 TAATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG372   AATGGGCT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    ATGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376     TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409      GGGCTTTT PPDB Motif GCCCA PLACE Motif

AtREG549       GGCTTTTA PPDB Motif PLACE Motif

REG TAATTGGGCTTTAT + 12152490 12152503 AT1G33500.1

AtREG600 TAATTGGG       PPDB Motif GCCCA PLACE Motif

AtREG418 AATTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG402   ATTGGGCT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    TTGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376     TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG365      GGGCTTTA PPDB Motif GCCCA PLACE Motif

AtREG601       GGCTTTAT PPDB Motif PLACE Motif

REG CTAAACCGGGTCGACCCGGT + 12152517 12152536 AT1G33500.1

AtREG511 CTAAACCG             PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG            PPDB Motif AACCG(G/A) PLACE Motif

AtREG455    AACCGGGT          PPDB Motif AACCG(G/A) PLACE Motif

AtREG463     ACCGGGTCGACCCGGT PPDB Motif AACCG(G/A), GGGACCC PLACE Motif

AtREG494      CCGGGTCGACCCGG PPDB Motif PLACE Motif

AtREG539       CGGGTCGACCCG   PPDB Motif PLACE Motif