PlantPromoterDB promoter information of AT1G34370.2

Summary of Gene (AT1G34370.2)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G34370 TAIR NCBI
Gene model	AT1G34370.2
Description	Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity.

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Overview

Focused view (chromosome 1: 12550002-12551201)

`Genome position from initiation codon` `AT1G34370.1 AT1G34370.3 TSS from cDNA TSS information AT1G34370.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G34370.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 12550446 -556

TSS clone C clone + 12550477 -525

TSS clone T clone + 12550485 -517

TSS clone C clone + 12550487 -515

TSS clone T clone + 12550496 -506

TSS clone T clone + 12550498 -504

TSS clone peak T clone + 12550501 -501

TSS clone T clone + 12550526 -476

TSS clone A clone + 12550571 -431

TSS clone A clone + 12550572 -430

TSS clone peak A clone + 12550994 -8

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	12550446	-556
TSS clone	`C`	clone	+	12550477	-525
TSS clone	`T`	clone	+	12550485	-517
TSS clone	`C`	clone	+	12550487	-515
TSS clone	`T`	clone	+	12550496	-506
TSS clone	`T`	clone	+	12550498	-504
TSS clone peak	`T`	clone	+	12550501	-501
TSS clone	`T`	clone	+	12550526	-476
TSS clone	`A`	clone	+	12550571	-431
TSS clone	`A`	clone	+	12550572	-430
TSS clone peak	`A`	clone	+	12550994	-8

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCCTCCTCTCTCTCT + 12550481 12550496 -521 -506

Y Patch CTTTCTCT + 12550513 12550520 -489 -482

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCCTCCTCTCTCTCT`	+	12550481	12550496	-521	-506
Y Patch	`CTTTCTCT`	+	12550513	12550520	-489	-482
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ATAAACCGT + 12550199 12550207 -803 -795

AtREG598 ATAAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG652 TAAACCGT PPDB Motif PLACE Motif

REG ACCGTCAGA + 12550347 12550355 -655 -647

AtREG625 ACCGTCAG PPDB Motif PLACE Motif

AtREG622 CCGTCAGA PPDB Motif PLACE Motif

REG TTAATGGGTTGACTTT + 12550397 12550412 -605 -590

AtREG396 TTAATGGG PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG632 TTGACTTT PPDB Motif PLACE Motif TTGAC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ATAAACCGT`		+	12550199	12550207	-803	-795
	AtREG598	`ATAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG652	`TAAACCGT`		PPDB Motif		PLACE Motif
REG	`ACCGTCAGA`		+	12550347	12550355	-655	-647
	AtREG625	`ACCGTCAG`		PPDB Motif		PLACE Motif
	AtREG622	`CCGTCAGA`		PPDB Motif		PLACE Motif
REG	`TTAATGGGTTGACTTT`		+	12550397	12550412	-605	-590
	AtREG396	`TTAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`
	AtREG632	`TTGACTTT`		PPDB Motif		PLACE Motif	`TTGAC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 + 12551040 AT1G34370.3

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	+	12551040	AT1G34370.3

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 12551198 AT1G34370.3

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	12551198	AT1G34370.3

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTTCTTC + 12551043 12551051 AT1G34370.3

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTTCTTC`	+	12551043	12551051	AT1G34370.3
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None