PlantPromoterDB promoter information of AT1G34370.3
Summary of Gene (AT1G34370.3)
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Overview
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Focused view (chromosome 1: 12550449-12551648)
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Genome position
from initiation codon AT1G34370.2 TSS from cDNA TSS information AT1G34370.3 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G34370.3
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 12551040 | -409 |
| TSS peak | G | 4 | + | 12551420 | -29 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 12550477 | -972 |
| TSS clone | T | clone | + | 12550485 | -964 |
| TSS clone | C | clone | + | 12550487 | -962 |
| TSS clone | T | clone | + | 12550496 | -953 |
| TSS clone | T | clone | + | 12550498 | -951 |
| TSS clone | T | clone | + | 12550501 | -948 |
| TSS clone | T | clone | + | 12550526 | -923 |
| TSS clone | A | clone | + | 12550571 | -878 |
| TSS clone | A | clone | + | 12550572 | -877 |
| TSS clone | A | clone | + | 12550994 | -455 |
| TSS clone | A | clone | + | 12551198 | -251 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCCTCCTCTCTCTCT | + | 12550481 | 12550496 | -968 | -953 |
| Y Patch | CTTTCTCT | + | 12550513 | 12550520 | -936 | -929 |
| Y Patch | CTCTTCTTC | + | 12551043 | 12551051 | -406 | -398 |
| Y Patch | TCTTCTTCC | + | 12551424 | 12551432 | -25 | -17 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATAAACCGT | + | 12550199 | 12550207 | -1250 | -1242 | |||
| AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||
| REG | ACCGTCAGA | + | 12550347 | 12550355 | -1102 | -1094 | |||
| AtREG625 | ACCGTCAG | PPDB Motif | PLACE Motif | ||||||
| AtREG622 | CCGTCAGA | PPDB Motif | PLACE Motif | ||||||
| REG | TTAATGGGTTGACTTT | + | 12550397 | 12550412 | -1052 | -1037 | |||
| AtREG396 | TTAATGGG | PPDB Motif | GCCCA | PLACE Motif | TTAATGG | ||||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||