PlantPromoterDB promoter information of AT1G34430.1

Summary of Gene (AT1G34430.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G34430 TAIR NCBI
Gene model	AT1G34430.1
Description	embryo defective 3003 (EMB3003); FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: cytosolic ribosome, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: LTA2; dihydrolipoyllysine-residue acetyltransferase (TAIR:AT3G25860.1); Has 15590 Blast hits to 14171 proteins in 1332 species: Archae - 64; Bacteria - 7001; Metazoa - 632; Fungi - 308; Plants - 200; Viruses - 0; Other Eukaryotes - 7385 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 12591084-12589885)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G34430.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G34430.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 4 - 12590172 -88

TSS peak G 4 - 12590110 -26

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	4	-	12590172	-88
TSS peak	`G`	4	-	12590110	-26

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone - 12590237 -153

TSS clone A clone - 12590204 -120

TSS clone G clone - 12590199 -115

TSS clone T clone - 12590198 -114

TSS clone G clone - 12590186 -102

TSS clone A clone - 12590142 -58

TSS clone T clone - 12590141 -57

TSS clone T clone - 12590118 -34

TSS clone T clone - 12590114 -30

TSS clone C clone - 12590109 -25

TSS clone T clone - 12590107 -23

TSS clone G clone - 12590105 -21

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	-	12590237	-153
TSS clone	`A`	clone	-	12590204	-120
TSS clone	`G`	clone	-	12590199	-115
TSS clone	`T`	clone	-	12590198	-114
TSS clone	`G`	clone	-	12590186	-102
TSS clone	`A`	clone	-	12590142	-58
TSS clone	`T`	clone	-	12590141	-57
TSS clone	`T`	clone	-	12590118	-34
TSS clone	`T`	clone	-	12590114	-30
TSS clone	`C`	clone	-	12590109	-25
TSS clone	`T`	clone	-	12590107	-23
TSS clone	`G`	clone	-	12590105	-21

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CGTCTTCTCC - 12590069 12590078 15 6

Y Patch TCTCTCTCTCTCTCTC - 12590111 12590126 -27 -42

Y Patch TTTCTCTCT - 12590128 12590136 -44 -52

Y Patch CTCTTCTT - 12590145 12590152 -61 -68

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CGTCTTCTCC`	-	12590069	12590078	15	6
Y Patch	`TCTCTCTCTCTCTCTC`	-	12590111	12590126	-27	-42
Y Patch	`TTTCTCTCT`	-	12590128	12590136	-44	-52
Y Patch	`CTCTTCTT`	-	12590145	12590152	-61	-68
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAAACGCGCGTGT - 12590255 12590267 -171 -183

AtREG566 AAAACGCG      PPDB Motif AAACG(C/G) PLACE Motif

AtREG385      GCGCGTGT PPDB Motif ACGCGC PLACE Motif ACACNNG

REG AAAAAGCCCAATA - 12590278 12590290 -194 -206

AtREG589 AAAAAGCC      PPDB Motif PLACE Motif

AtREG409 AAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402     AGCCCAAT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355      GCCCAATA PPDB Motif GCCCA PLACE Motif

REG CTATTGGGCCTT - 12590294 12590305 -210 -221

AtREG624 CTATTGGG     PPDB Motif GCCCA PLACE Motif

AtREG355 TATTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG352   ATTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    TTGGGCCT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353     TGGGCCTT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAAACGCGCGTGT`		-	12590255	12590267	-171	-183
	AtREG566	`AAAACGCG`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG385	`GCGCGTGT`		PPDB Motif	`ACGCGC`	PLACE Motif	`ACACNNG`
REG	`AAAAAGCCCAATA`		-	12590278	12590290	-194	-206
	AtREG589	`AAAAAGCC`		PPDB Motif		PLACE Motif
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG402	`AGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CTATTGGGCCTT`		-	12590294	12590305	-210	-221
	AtREG624	`CTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None