PlantPromoterDB promoter information of AT1G37130
Summary of Gene (AT1G37130)
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Overview
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Focused view (chromosome 1: 14157617-14158816)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G37130 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G37130
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 207 | + | 14158527 | -90 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 14158522 | -95 |
| TSS clone | C | clone | + | 14158526 | -91 |
| TSS clone | G | clone | + | 14158527 | -90 |
| TSS clone | T | clone | + | 14158528 | -89 |
| TSS clone | C | clone | + | 14158530 | -87 |
| TSS clone | A | clone | + | 14158533 | -84 |
| TSS clone | G | clone | + | 14158534 | -83 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTCCTATATAAC | + | 14158489 | 14158500 | -128 | -117 |
| Y Patch | CTCTCTCCT | + | 14158485 | 14158493 | -132 | -124 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGTGTGA | + | 14158442 | 14158449 | -175 | -168 | |||
| AtREG588 | ACGTGTGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||