PlantPromoterDB promoter information of AT1G49240
Summary of Gene (AT1G49240)
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Overview
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Focused view (chromosome 1: 18215539-18216738)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G49240 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G49240
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 222 | + | 18215918 | -621 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 18215872 | -667 |
| TSS clone | T | clone | + | 18215908 | -631 |
| TSS clone | C | clone | + | 18215909 | -630 |
| TSS clone | C | clone | + | 18215910 | -629 |
| TSS clone | C | clone | + | 18215911 | -628 |
| TSS clone | C | clone | + | 18215912 | -627 |
| TSS clone | T | clone | + | 18215913 | -626 |
| TSS clone | T | clone | + | 18215915 | -624 |
| TSS clone | G | clone | + | 18215918 | -621 |
| TSS clone | A | clone | + | 18215919 | -620 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATATAAATA | + | 18215874 | 18215883 | -665 | -656 |
| Y Patch | TTTCTTCTCC | + | 18215901 | 18215910 | -638 | -629 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATCCAACGG | + | 18215692 | 18215700 | -847 | -839 | |||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| REG | TGTCACGT | + | 18215761 | 18215768 | -778 | -771 | |||
| AtREG606 | TGTCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||