PlantPromoterDB promoter information of AT1G49975

Summary of Gene (AT1G49975)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G49975 TAIR NCBI
Gene model	AT1G49975
Description	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 19 Blast hits to 19 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 18503845-18505044)

`Genome position from initiation codon` `AT1G49975.1 TSS from cDNA TSS information AT1G49975 5'->3' (+) Promoter sequence AT1G49970.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G49975

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak T clone + 18504826 -19

TSS clone peak A clone + 18504836 -9

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`T`	clone	+	18504826	-19
TSS clone peak	`A`	clone	+	18504836	-9

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 13 - 18504566 AT1G49970.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	13	-	18504566	AT1G49970.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 18504566 AT1G49970.1

TSS clone A clone - 18504565 AT1G49970.1

TSS clone T clone - 18504543 AT1G49970.1

TSS clone G clone - 18504510 AT1G49970.1

TSS clone T clone - 18504500 AT1G49970.1

TSS clone C clone - 18504485 AT1G49970.1

TSS clone T clone - 18504484 AT1G49970.1

TSS clone G clone - 18504477 AT1G49970.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	18504566	AT1G49970.1
TSS clone	`A`	clone	-	18504565	AT1G49970.1
TSS clone	`T`	clone	-	18504543	AT1G49970.1
TSS clone	`G`	clone	-	18504510	AT1G49970.1
TSS clone	`T`	clone	-	18504500	AT1G49970.1
TSS clone	`C`	clone	-	18504485	AT1G49970.1
TSS clone	`T`	clone	-	18504484	AT1G49970.1
TSS clone	`G`	clone	-	18504477	AT1G49970.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTTC - 18504586 18504593 AT1G49970.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTTC`	-	18504586	18504593	AT1G49970.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TGGTTCGGT - 18504623 18504631 AT1G49970.1

AtREG655 TGGTTCGG PPDB Motif PLACE Motif

AtREG451 GGTTCGGT PPDB Motif PLACE Motif

REG AAAACCGGTTTAA - 18504657 18504669 AT1G49970.1

AtREG542 AAAACCGG      PPDB Motif AACCG(G/A) PLACE Motif

AtREG436 AAACCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412     CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG473      CGGTTTAA PPDB Motif AACCG(G/A) PLACE Motif