Summary of Gene (AT1G50660.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G50660.1 5'->3' (+) Promoter sequence AT1G50650.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | + | 18771215 | -171 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 18771210 | -176 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CATCTCTCTCTCTCTCTC | + | 18771192 | 18771209 | -194 | -177 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CACGCGCT | + | 18771082 | 18771089 | -304 | -297 | |||
AtREG381 | CACGCGCT | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | ACGACGTCGTC | + | 18771122 | 18771132 | -264 | -254 | |||
AtREG431 | ACGACGTCGT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
AtREG526 | ACGTCGTC | PPDB Motif | ACGT  | PLACE Motif | ACGT  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |