PlantPromoterDB promoter information of AT1G51500
Summary of Gene (AT1G51500)
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Overview
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Focused view (chromosome 1: 19101972-19100773)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G51500 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G51500
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 5 | - | 19101057 | -85 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 19101079 | -107 |
| TSS clone | A | clone | - | 19101075 | -103 |
| TSS clone | A | clone | - | 19101067 | -95 |
| TSS clone | T | clone | - | 19101063 | -91 |
| TSS clone | A | clone | - | 19101061 | -89 |
| TSS clone | A | clone | - | 19101057 | -85 |
| TSS clone | A | clone | - | 19101042 | -70 |
| TSS clone | A | clone | - | 19101010 | -38 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTTTATAA | - | 19101091 | 19101099 | -119 | -127 |
| Y Patch | CTCTCTCTTTCTCTCTCTCTCTCT | - | 19101015 | 19101038 | -43 | -66 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTTAGGCC | - | 19101118 | 19101125 | -146 | -153 | |||
| AtREG563 | CTTAGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | TTAAAGCC | - | 19101187 | 19101194 | -215 | -222 | |||
| AtREG545 | TTAAAGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||