PlantPromoterDB promoter information of AT1G52040
Summary of Gene (AT1G52040)
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Overview
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Focused view (chromosome 1: 19353578-19352379)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G52040 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G52040
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | - | 19352767 | -189 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 19352779 | -201 |
| TSS clone | C | clone | - | 19352778 | -200 |
| TSS clone | G | clone | - | 19352776 | -198 |
| TSS clone | A | clone | - | 19352774 | -196 |
| TSS clone | A | clone | - | 19352769 | -191 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTAATTACACGTGTT | - | 19352889 | 19352904 | -311 | -326 | |||
| AtREG646 | CGTAATTA | ABA | PPDB Motif | PLACE Motif | |||||
| AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| AtREG590 | CACGTGTT | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||