Summary of Gene (AT1G52150.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G52150.1 5'->3' (-) Promoter sequence AT1G52155.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | - | 19414680 | -719 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 19414678 | -717 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCTTTCCTCTTTCCT | - | 19414632 | 19414648 | -671 | -687 |
Y Patch | TCCTCTCTTCT | - | 19414654 | 19414664 | -693 | -703 |
Y Patch | TCTCTTCTTC | - | 19414666 | 19414675 | -705 | -714 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTAAGGCC | - | 19414792 | 19414799 | -831 | -838 | |||
AtREG416 | TTAAGGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 4 | + | 19417774 | AT1G52155.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTTCTCC | + | 19417750 | 19417758 | AT1G52155.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |