PlantPromoterDB promoter information of AT1G52860
Summary of Gene (AT1G52860)
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Overview
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Focused view (chromosome 1: 19686219-19685020)
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Genome position
TSS from cDNA TSS information AT1G52860 5'->3' (-) Promoter sequence AT1G52870.1
AT1G52870.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G52860
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 10 | + | 19685789 | AT1G52870.1, AT1G52870.2 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 19685789 | AT1G52870.1, AT1G52870.2 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATATAAGA | + | 19685758 | 19685765 | AT1G52870.1, AT1G52870.2 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGGTTAAA | + | 19685569 | 19685576 | AT1G52870.1, AT1G52870.2 | ||||
| AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | ACCGTTAG | + | 19685677 | 19685684 | AT1G52870.1, AT1G52870.2 | ||||
| AtREG603 | ACCGTTAG | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
| REG | CTACGTGG | + | 19685727 | 19685734 | AT1G52870.1, AT1G52870.2 | ||||
| AtREG495 | CTACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||