PlantPromoterDB promoter information of AT1G53750.1
Summary of Gene (AT1G53750.1)
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Overview
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Focused view (chromosome 1: 20069324-20068125)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G53750.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G53750.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | - | 20068424 | -100 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 20068464 | -140 |
| TSS clone | A | clone | - | 20068463 | -139 |
| TSS clone | A | clone | - | 20068459 | -135 |
| TSS clone | G | clone | - | 20068458 | -134 |
| TSS clone | A | clone | - | 20068418 | -94 |
| TSS clone | T | clone | - | 20068412 | -88 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACGTCAC | - | 20068480 | 20068487 | -156 | -163 | |||
| AtREG466 | CACGTCAC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | CACGTGTG | - | 20068503 | 20068510 | -179 | -186 | |||
| AtREG460 | CACGTGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| REG | AAAAAGCCCATTTTACACGTGGG | - | 20068516 | 20068538 | -192 | -214 | |||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG409 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG376 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG372 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG386 | GCCCATTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG464 | CACGTGGG | ABA, Auxin, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| REG | ATATGGGCCTC | - | 20068543 | 20068553 | -219 | -229 | |||
| AtREG432 | ATATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG364 | TATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG447 | TGGGCCTC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | CACGTGGG | - | 20068589 | 20068596 | -265 | -272 | |||
| AtREG464 | CACGTGGG | ABA, Auxin, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||