PlantPromoterDB promoter information of AT1G54100.2

Summary of Gene (AT1G54100.2)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G54100 TAIR NCBI
Gene model	AT1G54100.2
Description	Aldehyde dehydrogenase

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Overview

Focused view (chromosome 1: 20199853-20198654)

`Genome position from initiation codon` `AT1G54100.1 TSS from cDNA TSS information AT1G54100.2 5'->3' (-) Promoter sequence AT1G54110.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G54100.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 4 - 20199001 -148

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	4	-	20199001	-148

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 20199130 -277

TSS clone A clone - 20199051 -198

TSS clone A clone - 20199012 -159

TSS clone A clone - 20199000 -147

TSS clone T clone - 20198972 -119

TSS clone A clone - 20198970 -117

TSS clone A clone - 20198969 -116

TSS clone T clone - 20198965 -112

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	20199130	-277
TSS clone	`A`	clone	-	20199051	-198
TSS clone	`A`	clone	-	20199012	-159
TSS clone	`A`	clone	-	20199000	-147
TSS clone	`T`	clone	-	20198972	-119
TSS clone	`A`	clone	-	20198970	-117
TSS clone	`A`	clone	-	20198969	-116
TSS clone	`T`	clone	-	20198965	-112

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCCCTCT - 20199004 20199011 -151 -158

Y Patch CGTCTCTCTCTCTC - 20199013 20199026 -160 -173

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCCCTCT`	-	20199004	20199011	-151	-158
Y Patch	`CGTCTCTCTCTCTC`	-	20199013	20199026	-160	-173
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ATATTGGG - 20199129 20199136 -276 -283

AtREG509 ATATTGGG PPDB Motif PLACE Motif

REG GGACACGTGACA - 20199167 20199178 -314 -325

AtREG472 GGACACGT     ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG366 GACACGTG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG628   ACACGTGA   DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG583    CACGTGAC PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG606     ACGTGACA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG CGTGGCAAT - 20199239 20199247 -386 -394

AtREG452 CGTGGCAA PPDB Motif PLACE Motif GCCAC

AtREG654 GTGGCAAT PPDB Motif PLACE Motif GCCAC

REG TTAATGGGCCTGGCCCATA - 20199258 20199276 -405 -423

AtREG396 TTAATGGG            PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG357 TAATGGGC           PPDB Motif GCCCA PLACE Motif

AtREG361   AATGGGCC          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    ATGGGCCT         PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG370     TGGGCCTG        PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG619      GGGCCTGG       PPDB Motif GCCCA PLACE Motif GGGCC

AtREG490           TGGCCCAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364            GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG AACCCGGTTTG - 20199288 20199298 -435 -445

AtREG516 AACCCGGT    PPDB Motif PLACE Motif

AtREG455 ACCCGGTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG496    CCGGTTTG PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ATATTGGG`		-	20199129	20199136	-276	-283
	AtREG509	`ATATTGGG`		PPDB Motif		PLACE Motif
REG	`GGACACGTGACA`		-	20199167	20199178	-314	-325
	AtREG472	`GGACACGT`	ABA, DREB1Aox, Drought	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
	AtREG366	`GACACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC`
	AtREG628	`ACACGTGA`	DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG583	`CACGTGAC`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG606	`ACGTGACA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`CGTGGCAAT`		-	20199239	20199247	-386	-394
	AtREG452	`CGTGGCAA`		PPDB Motif		PLACE Motif	`GCCAC`
	AtREG654	`GTGGCAAT`		PPDB Motif		PLACE Motif	`GCCAC`
REG	`TTAATGGGCCTGGCCCATA`		-	20199258	20199276	-405	-423
	AtREG396	`TTAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`
	AtREG357	`TAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG361	`AATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`ATGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG370	`TGGGCCTG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG619	`GGGCCTGG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG490	`TGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG364	`GGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`AACCCGGTTTG`		-	20199288	20199298	-435	-445
	AtREG516	`AACCCGGT`		PPDB Motif		PLACE Motif
	AtREG455	`ACCCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG496	`CCGGTTTG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None