Summary of Gene (AT1G54320.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G54320.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 26 | - | 20277951 | -158 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 20277957 | -164 |
TSS clone | A | clone | - | 20277953 | -160 |
TSS clone | G | clone | - | 20277951 | -158 |
TSS clone | A | clone | - | 20277950 | -157 |
TSS clone | A | clone | - | 20277949 | -156 |
TSS clone | T | clone | - | 20277948 | -155 |
TSS clone | G | clone | - | 20277943 | -150 |
TSS clone | T | clone | - | 20277942 | -149 |
TSS clone | T | clone | - | 20277934 | -141 |
TSS clone | T | clone | - | 20277912 | -119 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTTCTTCTTCCTCT | - | 20277916 | 20277931 | -123 | -138 |
Y Patch | CGTCTTCC | - | 20277937 | 20277944 | -144 | -151 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTGGGCCTTT | - | 20278003 | 20278012 | -210 | -219 | |||
AtREG482 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG359 | GGGCCTTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | TAAAGCCCATTATAAAGCCCAC | - | 20278016 | 20278037 | -223 | -244 | |||
AtREG365 | TAAAGCCC TAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG372 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG546 | CCCATTAT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG601 | ATAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG518 | AAGCCCAC | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | TTTTGGGCTTC | - | 20278055 | 20278065 | -262 | -272 | |||
AtREG529 | TTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG469 | TTTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG476 | TGGGCTTC | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |