PlantPromoterDB promoter information of AT1G56280.1

Summary of Gene (AT1G56280.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G56280 TAIR NCBI
Gene model	AT1G56280.1
Description	Encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The increase in transcript level is independent from abscisic acid level. Sequence is not similar to any protein of known function. It appears to be a member of plant-specific gene family. It's phosphorylated by AtCPK11 in a Ca(2+)-dependent manner at Thr105 and Ser107 within the AtDi19 bipartite nuclear localization signal

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Overview

Focused view (chromosome 1: 21075725-21074526)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G56280.1 5'->3' (-) Promoter sequence AT1G56290.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G56280.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 44 - 21074839 -114

TSS peak C 30 - 21074730 -5

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	44	-	21074839	-114
TSS peak	`C`	30	-	21074730	-5

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone - 21074863 -138

TSS clone C clone - 21074852 -127

TSS clone C clone - 21074851 -126

TSS clone T clone - 21074850 -125

TSS clone T clone - 21074848 -123

TSS clone T clone - 21074840 -115

TSS clone C clone - 21074838 -113

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	-	21074863	-138
TSS clone	`C`	clone	-	21074852	-127
TSS clone	`C`	clone	-	21074851	-126
TSS clone	`T`	clone	-	21074850	-125
TSS clone	`T`	clone	-	21074848	-123
TSS clone	`T`	clone	-	21074840	-115
TSS clone	`C`	clone	-	21074838	-113

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CGTCTTCTTCTTC - 21074814 21074826 -89 -101

Y Patch CTTTCTCTTCCTCTCTCCTCCT - 21074840 21074861 -115 -136

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CGTCTTCTTCTTC`	-	21074814	21074826	-89	-101
Y Patch	`CTTTCTCTTCCTCTCTCCTCCT`	-	21074840	21074861	-115	-136
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GAACCGGTC - 21074906 21074914 -181 -189

AtREG528 GAACCGGT PPDB Motif AACCG(G/A) PLACE Motif

AtREG552 AACCGGTC PPDB Motif AACCG(G/A) PLACE Motif

REG CAAACCGG - 21074930 21074937 -205 -212

AtREG496 CAAACCGG PPDB Motif AACCG(G/A) PLACE Motif

REG ATAACCGGAA - 21074946 21074955 -221 -230

AtREG548 ATAACCGG   PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG621 TAACCGGA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG534   AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

REG TTAACCGGTC - 21075000 21075009 -275 -284

AtREG501 TTAACCGG   PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG503 TAACCGGT PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG552   AACCGGTC PPDB Motif AACCG(G/A) PLACE Motif

REG GAACCGGTC - 21075066 21075074 -341 -349

AtREG528 GAACCGGT PPDB Motif AACCG(G/A) PLACE Motif

AtREG552 AACCGGTC PPDB Motif AACCG(G/A) PLACE Motif

REG AAAACGAC - 21075093 21075100 -368 -375

AtREG520 AAAACGAC PPDB Motif PLACE Motif

REG ATAAACCGGAA - 21075105 21075115 -380 -390

AtREG598 ATAAACCG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   AAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG534    AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GAACCGGTC`		-	21074906	21074914	-181	-189
	AtREG528	`GAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG552	`AACCGGTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CAAACCGG`		-	21074930	21074937	-205	-212
	AtREG496	`CAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`ATAACCGGAA`		-	21074946	21074955	-221	-230
	AtREG548	`ATAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG621	`TAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG534	`AACCGGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TTAACCGGTC`		-	21075000	21075009	-275	-284
	AtREG501	`TTAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG503	`TAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG552	`AACCGGTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`GAACCGGTC`		-	21075066	21075074	-341	-349
	AtREG528	`GAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG552	`AACCGGTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`AAAACGAC`		-	21075093	21075100	-368	-375
	AtREG520	`AAAACGAC`		PPDB Motif		PLACE Motif
REG	`ATAAACCGGAA`		-	21075105	21075115	-380	-390
	AtREG598	`ATAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`TAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG521	`AAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG534	`AACCGGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 13 + 21075293 AT1G56290.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	13	+	21075293	AT1G56290.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 21075286 AT1G56290.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	21075286	AT1G56290.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCCTTCTTCC + 21075309 21075319 AT1G56290.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCCTTCTTCC`	+	21075309	21075319	AT1G56290.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GACCGGTTAA + 21075000 21075009 AT1G56290.1

AtREG552 GACCGGTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG503 ACCGGTTA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG501   CCGGTTAA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG GACCGGTTC + 21075066 21075074 AT1G56290.1

AtREG552 GACCGGTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG528 ACCGGTTC PPDB Motif AACCG(G/A) PLACE Motif

REG GTCGTTTT + 21075093 21075100 AT1G56290.1

AtREG520 GTCGTTTT PPDB Motif PLACE Motif

REG TTCCGGTTTAT + 21075105 21075115 AT1G56290.1

AtREG534 TTCCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG521 TCCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412   CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG598    CGGTTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG GACCGGTTAT + 21075166 21075175 AT1G56290.1

AtREG552 GACCGGTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG503 ACCGGTTA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG548   CCGGTTAT PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG CCGGTTTT + 21075189 21075196 AT1G56290.1

AtREG542 CCGGTTTT PPDB Motif AACCG(G/A) PLACE Motif

REG GTCCGGTTTAT + 21075208 21075218 AT1G56290.1

AtREG573 GTCCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG521 TCCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412   CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG598    CGGTTTAT PPDB Motif AACCG(G/A) PLACE Motif