PlantPromoterDB promoter information of AT1G56340
Summary of Gene (AT1G56340)
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Overview
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Focused view (chromosome 1: 21093630-21092431)
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Genome position
from initiation codon AT1G56340.2 AT1G56345.1 TSS from cDNA TSS information AT1G56340 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G56340
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 36 | - | 21092657 | -27 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 21092657 | -27 |
| TSS clone | T | clone | - | 21092656 | -26 |
| TSS clone | G | clone | - | 21092655 | -25 |
| TSS clone | A | clone | - | 21092654 | -24 |
| TSS clone | C | clone | - | 21092651 | -21 |
| TSS clone | G | clone | - | 21092647 | -17 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTATATATT | - | 21092681 | 21092689 | -51 | -59 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCACGTCAGC | - | 21092716 | 21092725 | -86 | -95 | |||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG440 | CACGTCAG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG515 | ACGTCAGC | SA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | ACGTGGAT | - | 21092748 | 21092755 | -118 | -125 | |||
| AtREG547 | ACGTGGAT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | ATGACACG | - | 21092787 | 21092794 | -157 | -164 | |||
| AtREG438 | ATGACACG | ABA | PPDB Motif | PLACE Motif | |||||
| REG | AGCCACGTCAT | - | 21092799 | 21092809 | -169 | -179 | |||
| AtREG450 | AGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG388 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG483 | CACGTCAT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | TCACGTGTA | - | 21092861 | 21092869 | -231 | -239 | |||
| AtREG628 | TCACGTGT | DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG453 | CACGTGTA | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| REG | TCTGACGG | - | 21092899 | 21092906 | -269 | -276 | |||
| AtREG622 | TCTGACGG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||