Summary of Gene (AT1G57765)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT1G57770.1 TSS from cDNA TSS information AT1G57765 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | + | 21393067 | -426 |
TSS peak | G | 2 | + | 21393383 | -110 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 21393381 | -112 |
TSS clone | A | clone | + | 21393396 | -97 |
TSS clone | T | clone | + | 21393405 | -88 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCTTCTTCCT | + | 21393412 | 21393423 | -81 | -70 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCGACCCG | + | 21393019 | 21393026 | -474 | -467 | |||
AtREG539 | TCGACCCG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 8 | + | 21395217 | AT1G57770.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 21395196 | AT1G57770.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTCTCT | + | 21395231 | 21395239 | AT1G57770.1 | |
Y Patch | TCCTCTCC | + | 21395245 | 21395252 | AT1G57770.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTAATGGGCTTG | + | 21395037 | 21395048 | AT1G57770.1 | ||||
AtREG396 | TTAATGGG | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG525 | TGGGCTTG | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | TTAGCCCATAT | + | 21395075 | 21395085 | AT1G57770.1 | ||||
AtREG571 | TTAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG581 | TAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG477 | AGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG432 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACGTGGCT | + | 21395152 | 21395159 | AT1G57770.1 | ||||
AtREG450 | ACGTGGCT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
REG | TTAAGGCC | + | 21395163 | 21395170 | AT1G57770.1 | ||||
AtREG416 | TTAAGGCC | PPDB Motif |   | PLACE Motif |   |