PlantPromoterDB promoter information of AT1G61520
Summary of Gene (AT1G61520)
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Overview
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Focused view (chromosome 1: 22699152-22700351)
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Genome position
from initiation codon AT1G61520.2 TSS from cDNA TSS information AT1G61520 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G61520
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 116 | + | 22700069 | -83 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 22700011 | -141 |
| TSS clone | T | clone | + | 22700026 | -126 |
| TSS clone | A | clone | + | 22700048 | -104 |
| TSS clone | T | clone | + | 22700054 | -98 |
| TSS clone | T | clone | + | 22700056 | -96 |
| TSS clone | T | clone | + | 22700060 | -92 |
| TSS clone | T | clone | + | 22700063 | -89 |
| TSS clone | A | clone | + | 22700064 | -88 |
| TSS clone | C | clone | + | 22700065 | -87 |
| TSS clone | C | clone | + | 22700066 | -86 |
| TSS clone | A | clone | + | 22700069 | -83 |
| TSS clone | A | clone | + | 22700070 | -82 |
| TSS clone | T | clone | + | 22700073 | -79 |
| TSS clone | C | clone | + | 22700082 | -70 |
| TSS clone | A | clone | + | 22700088 | -64 |
| TSS clone | T | clone | + | 22700089 | -63 |
| TSS clone | A | clone | + | 22700091 | -61 |
| TSS clone | T | clone | + | 22700100 | -52 |
| TSS clone | T | clone | + | 22700106 | -46 |
| TSS clone | T | clone | + | 22700120 | -32 |
| TSS clone | T | clone | + | 22700257 | 105 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTTCT | + | 22700056 | 22700063 | -96 | -89 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATTGCCACGTGGAC | + | 22699957 | 22699970 | -195 | -182 | |||
| AtREG654 | ATTGCCAC | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG452 | TTGCCACG | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG408 | CACGTGGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| AtREG513 | ACGTGGAC | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | AGTTGGGCTATT | + | 22700016 | 22700027 | -136 | -125 | |||
| AtREG607 | AGTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | TGGGCY | ||||
| AtREG584 | GGGCTATT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||