PlantPromoterDB promoter information of AT1G62560
Summary of Gene (AT1G62560)
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Overview
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Focused view (chromosome 1: 23167962-23169161)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G62560 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G62560
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 23159823 | -89 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 28 | + | 23169140 | AT1G62570.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 23169136 | AT1G62570.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTCTATATAAATC | + | 23169101 | 23169114 | AT1G62570.1 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CCGGTATA | + | 23168911 | 23168918 | AT1G62570.1 | ||||
| AtREG629 | CCGGTATA | PPDB Motif | PLACE Motif | ||||||
| REG | TACGTGTCA | + | 23168995 | 23169003 | AT1G62570.1 | ||||
| AtREG557 | TACGTGTC | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | AAACCGGAT | + | 23169006 | 23169014 | AT1G62570.1 | ||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ATTTGGGC | + | 23169030 | 23169037 | AT1G62570.1 | ||||
| AtREG421 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TAACGCGG | + | 23169057 | 23169064 | AT1G62570.1 | ||||
| AtREG488 | TAACGCGG | SA | PPDB Motif | PLACE Motif | |||||