PlantPromoterDB promoter information of AT1G63460.1

Summary of Gene (AT1G63460.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G63460 TAIR NCBI
Gene model	AT1G63460.1
Description	glutathione peroxidase, putative; FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase (TAIR:AT4G11600.1); Has 5286 Blast hits to 5285 proteins in 1007 species: Archae - 0; Bacteria - 1863; Metazoa - 687; Fungi - 136; Plants - 239; Viruses - 8; Other Eukaryotes - 2353 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 23534118-23535317)

`Genome position from initiation codon` `AT1G63450.1 TSS from cDNA TSS information AT1G63460.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G63460.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 10 + 23535101 -17

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	10	+	23535101	-17

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone + 23535016 -102

TSS clone T clone + 23535017 -101

TSS clone T clone + 23535086 -32

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	+	23535016	-102
TSS clone	`T`	clone	+	23535017	-101
TSS clone	`T`	clone	+	23535086	-32

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTTCCTTCCTC + 23535072 23535084 -46 -34

Y Patch CTTCTTCT + 23535093 23535100 -25 -18

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTTCCTTCCTC`	+	23535072	23535084	-46	-34
Y Patch	`CTTCTTCT`	+	23535093	23535100	-25	-18
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GTGGCCCAATAGAAGCCCATTAAG + 23534957 23534980 -161 -138

AtREG445 GTGGCCCA                 PPDB Motif GCCCA PLACE Motif GCCAC, GGGCC, TGGGCY

AtREG420 TGGCCCAA                PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352   GGCCCAAT               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355    GCCCAATA              PPDB Motif GCCCA PLACE Motif

AtREG624     CCCAATAG             PPDB Motif GCCCA PLACE Motif

AtREG476            GAAGCCCA      PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378             AAGCCCAT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372              AGCCCATT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG357               GCCCATTA   PPDB Motif GCCCA PLACE Motif

AtREG396                CCCATTAA PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG604                 CCATTAAG PPDB Motif PLACE Motif TTAATGG

REG GAAACGAC + 23534996 23535003 -122 -115

AtREG576 GAAACGAC PPDB Motif PLACE Motif

REG ACGTCACGCGC + 23535014 23535024 -104 -94

AtREG489 ACGTCACG    ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT

AtREG395    TCACGCGC PPDB Motif ACGCGC PLACE Motif

REG CTCGCGCGTGT + 23535029 23535039 -89 -79

AtREG512 CTCGCGCG    PPDB Motif ACGCGC PLACE Motif

AtREG385    GCGCGTGT PPDB Motif ACGCGC PLACE Motif ACACNNG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GTGGCCCAATAGAAGCCCATTAAG`		+	23534957	23534980	-161	-138
	AtREG445	`GTGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GCCAC, GGGCC, TGGGCY`
	AtREG420	`TGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG624	`CCCAATAG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG476	`GAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG372	`AGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG357	`GCCCATTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG396	`CCCATTAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`
	AtREG604	`CCATTAAG`		PPDB Motif		PLACE Motif	`TTAATGG`
REG	`GAAACGAC`		+	23534996	23535003	-122	-115
	AtREG576	`GAAACGAC`		PPDB Motif		PLACE Motif
REG	`ACGTCACGCGC`		+	23535014	23535024	-104	-94
	AtREG489	`ACGTCACG`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
	AtREG395	`TCACGCGC`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`CTCGCGCGTGT`		+	23535029	23535039	-89	-79
	AtREG512	`CTCGCGCG`		PPDB Motif	`ACGCGC`	PLACE Motif
	AtREG385	`GCGCGTGT`		PPDB Motif	`ACGCGC`	PLACE Motif	`ACACNNG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None