Summary of Gene (AT1G63900.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G63900.1 5'->3' (+) Promoter sequence AT1G63870.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 2 | + | 23716730 | -326 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 23716719 | -337 |
TSS clone | A | clone | + | 23716731 | -325 |
TSS clone | A | clone | + | 23716758 | -298 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCC | + | 23716698 | 23716705 | -358 | -351 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGGGCTTA | + | 23716614 | 23716621 | -442 | -435 | |||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | GTAGGCCCATTG | + | 23716636 | 23716647 | -420 | -409 | |||
AtREG435 | GTAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG358 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG551 | GCCCATTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCCACGTCATC | + | 23716660 | 23716670 | -396 | -386 | |||
AtREG388 | GCCACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG419 | CCACGTCA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG483 | CACGTCAT | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG578 | ACGTCATC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |