Summary of Gene (AT1G63940.1)
|
Overview |
Genome position
from initiation codon AT1G63930.1 TSS from cDNA TSS information AT1G63940.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | + | 23729890 | -316 |
TSS peak | A | 15 | + | 23730122 | -84 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | + | 23729981 | -225 |
TSS clone | C | clone | + | 23730050 | -156 |
TSS clone | T | clone | + | 23730052 | -154 |
TSS clone | A | clone | + | 23730087 | -119 |
TSS clone | A | clone | + | 23730094 | -112 |
TSS clone | A | clone | + | 23730122 | -84 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTATAAACT | + | 23730084 | 23730093 | -122 | -113 |
Y Patch | CTCTTCTT | + | 23730079 | 23730086 | -127 | -120 |
Y Patch | TCTCTCTC | + | 23730114 | 23730121 | -92 | -85 |
Y Patch | TCTTCTTCCTC | + | 23730133 | 23730143 | -73 | -63 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |