PlantPromoterDB promoter information of AT1G64720.1
Summary of Gene (AT1G64720.1)
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Overview
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Focused view (chromosome 1: 24049537-24048338)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G64720.1 5'->3' (-) Promoter sequence AT1G64730.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G64720.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 77 | - | 24048595 | -58 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 24048740 | -203 |
| TSS clone | A | clone | - | 24048734 | -197 |
| TSS clone | G | clone | - | 24048712 | -175 |
| TSS clone | C | clone | - | 24048616 | -79 |
| TSS clone | G | clone | - | 24048603 | -66 |
| TSS clone | T | clone | - | 24048602 | -65 |
| TSS clone | T | clone | - | 24048600 | -63 |
| TSS clone | T | clone | - | 24048597 | -60 |
| TSS clone | G | clone | - | 24048595 | -58 |
| TSS clone | A | clone | - | 24048594 | -57 |
| TSS clone | A | clone | - | 24048585 | -48 |
| TSS clone | C | clone | - | 24048581 | -44 |
| TSS clone | T | clone | - | 24048573 | -36 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTTCTTCTTC | - | 24048613 | 24048626 | -76 | -89 |
| Y Patch | TCTTCTCTCTC | - | 24048635 | 24048645 | -98 | -108 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AATTGGGCCTAC | - | 24048673 | 24048684 | -136 | -147 | |||
| AtREG418 | AATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG352 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | TTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG358 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG435 | GGGCCTAC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||