Summary of Gene (AT1G64850.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G64850.1 5'->3' (-) Promoter sequence AT1G64860.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 13 | - | 24097604 | -30 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 24097650 | -76 |
TSS clone | A | clone | - | 24097603 | -29 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATTGGCCCAAAT | - | 24097677 | 24097688 | -103 | -114 | |||
AtREG446 | ATTGGCCC | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | |||
AtREG484 | TTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG420 | TGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG373 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG421 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TAAATGGGCCGTT | - | 24097702 | 24097714 | -128 | -140 | |||
AtREG443 | TAAATGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG386 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG361 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG368 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG377 | GGGCCGTT | PPDB Motif | GCCCA, AAACG(C/G)  | PLACE Motif | GGGCC  | ||||
REG | TTAAGGCCCATTTGAGCCCA | - | 24097736 | 24097755 | -162 | -181 | |||
AtREG416 | TTAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG351 | TAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG386 | GCCCATTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG485 | TGAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | CCCATTTA | - | 24097776 | 24097783 | -202 | -209 | |||
AtREG443 | CCCATTTA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 24098002 | AT1G64860.1 |
TSS clone | A | clone | + | 24098003 | AT1G64860.1 |
TSS clone peak | A | clone | + | 24098004 | AT1G64860.1 |
TSS clone | A | clone | + | 24098056 | AT1G64860.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |