Summary of Gene (AT1G65020.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G65020.1 5'->3' (-) Promoter sequence AT1G65030.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 24156575 | -64 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 24156605 | -94 |
TSS clone | G | clone | - | 24156601 | -90 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTCTC | - | 24156555 | 24156562 | -44 | -51 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTGAACCGACT | - | 24156649 | 24156659 | -138 | -148 | |||
AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG641 | AACCGACT | PPDB Motif | AACCG(G/A), CCGAC  | PLACE Motif | CCGAC, RCCGAC  | ||||
REG | AAAACCGGTTA | - | 24156681 | 24156691 | -170 | -180 | |||
AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG503 | ACCGGTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | TTAAACCGGAT | - | 24156695 | 24156705 | -184 | -194 | |||
AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | GGCGTCGT | - | 24156862 | 24156869 | -351 | -358 | |||
AtREG537 | GGCGTCGT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 10 | + | 24156762 | AT1G65030.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 24156763 | AT1G65030.1 |
TSS clone | A | clone | + | 24156770 | AT1G65030.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCCTCT | + | 24156718 | 24156726 | AT1G65030.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AGTCGGTTCAA | + | 24156649 | 24156659 | AT1G65030.1 | ||||
AtREG641 | AGTCGGTT | PPDB Motif | AACCG(G/A), CCGAC  | PLACE Motif | CCGAC, RCCGAC  | ||||
AtREG640 | CGGTTCAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TAACCGGTTTT | + | 24156681 | 24156691 | AT1G65030.1 | ||||
AtREG503 | TAACCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG436 | ACCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG542 | CCGGTTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ATCCGGTTTAA | + | 24156695 | 24156705 | AT1G65030.1 | ||||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |