Summary of Gene (AT1G65540.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G65540.1 5'->3' (-) Promoter sequence AT1G65541.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 5 | - | 24366439 | -428 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTTCTTCTTCTTCTTCTTCTTC | - | 24366445 | 24366470 | -434 | -459 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCGACCCGACCCGAA | - | 24366505 | 24366519 | -494 | -508 | |||
AtREG539 | TCGACCCG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG383 | CGACCCGACCCGA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG390 | GACCCGAC | PPDB Motif | CCGAC, GGGACCC  | PLACE Motif | CCGAC  | ||||
AtREG405 | ACCCGACC | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG442 | CCCGACCC | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG375 | CCGACCCG | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG597 | GACCCGAA | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | CGGACCCGACCCGA | - | 24366521 | 24366534 | -510 | -523 | |||
AtREG491 | CGGACCCG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG390 | GACCCGAC | PPDB Motif | CCGAC, GGGACCC  | PLACE Motif | CCGAC  | ||||
AtREG405 | ACCCGACC | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG442 | CCCGACCC | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG375 | CCGACCCG | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG383 | CGACCCGA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TAATTGGG | - | 24366586 | 24366593 | -575 | -582 | |||
AtREG600 | TAATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |