PlantPromoterDB promoter information of AT1G65541.1
Summary of Gene (AT1G65541.1)
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Overview
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Focused view (chromosome 1: 24365310-24366509)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G65541.1 5'->3' (+) Promoter sequence AT1G65540.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G65541.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 5 | - | 24366439 | AT1G65540.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTTCTTCTTCTTCTTCTTCTTC | - | 24366445 | 24366470 | AT1G65540.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ACCCGACCCGAA | - | 24366505 | 24366516 | AT1G65540.1 | ||||
| AtREG405 | ACCCGACC | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG442 | CCCGACCC | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG375 | CCGACCCG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG383 | CGACCCGA | PPDB Motif | PLACE Motif | ||||||
| AtREG597 | GACCCGAA | PPDB Motif | GGGACCC | PLACE Motif | |||||