PlantPromoterDB promoter information of AT1G65830.1
Summary of Gene (AT1G65830.1)
|
Overview
|
Focused view (chromosome 1: 24485923-24484724)
|
Genome position
TSS from cDNA TSS information AT1G65830.1 5'->3' (-) Promoter sequence AT1G65820.1
AT1G65820.2 AT1G65820.3 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT1G65830.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 18 | + | 24485134 | AT1G65820.1, AT1G65820.2, AT1G65820.3 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | + | 24485135 | AT1G65820.1, AT1G65820.2, AT1G65820.3 |
| TSS clone | C | clone | + | 24485140 | AT1G65820.1, AT1G65820.2, AT1G65820.3 |
| TSS clone | C | clone | + | 24485157 | AT1G65820.1, AT1G65820.2, AT1G65820.3 |
| TSS clone | A | clone | + | 24485164 | AT1G65820.1, AT1G65820.2, AT1G65820.3 |
| TSS clone | A | clone | + | 24485171 | AT1G65820.1, AT1G65820.2, AT1G65820.3 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ATTGGGCCCAATG | + | 24484916 | 24484928 | AT1G65820.1, AT1G65820.2, AT1G65820.3 | ||||
| AtREG352 | ATTGGGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG422 | TGGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG392 | TTGGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG461 | GCCCAATG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TATGGGCCTAAA | + | 24484945 | 24484956 | AT1G65820.1, AT1G65820.2, AT1G65820.3 | ||||
| AtREG364 | TATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG358 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG360 | GGGCCTAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG430 | GGCCTAAA | PPDB Motif | PLACE Motif | ||||||
| REG | GTAGGCCCAATAT | + | 24484967 | 24484979 | AT1G65820.1, AT1G65820.2, AT1G65820.3 | ||||
| AtREG435 | GTAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG358 | TAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG352 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG355 | GCCCAATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG509 | CCCAATAT | PPDB Motif | PLACE Motif | ||||||
| REG | TACACGTGA | + | 24485078 | 24485086 | AT1G65820.1, AT1G65820.2, AT1G65820.3 | ||||
| AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| AtREG628 | ACACGTGA | DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||