PlantPromoterDB promoter information of AT1G65830.1
Summary of Gene (AT1G65830.1)
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Overview
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Focused view (chromosome 1: 24490123-24488924)
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Genome position
TSS from cDNA TSS information AT1G65830.1 5'->3' (-) Promoter sequence AT1G65840.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G65830.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 2 | + | 24489784 | AT1G65840.1 |
| TSS peak | A | 4 | + | 24489910 | AT1G65840.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 24489784 | AT1G65840.1 |
| TSS clone | C | clone | + | 24489785 | AT1G65840.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCACTATAAAAA | + | 24489746 | 24489757 | AT1G65840.1 | |
| Y Patch | TCTTCTTC | + | 24489797 | 24489804 | AT1G65840.1 | |
| Y Patch | TTTCTCTCAT | + | 24489818 | 24489827 | AT1G65840.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGTCATTT | + | 24489676 | 24489683 | AT1G65840.1 | ||||
| AtREG657 | CGTCATTT | PPDB Motif | PLACE Motif | ||||||
| REG | AGGGGTAA | + | 24489715 | 24489722 | AT1G65840.1 | ||||
| AtREG642 | AGGGGTAA | PPDB Motif | ACCCCT | PLACE Motif | |||||
| REG | AAAAAGCC | + | 24489753 | 24489760 | AT1G65840.1 | ||||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||