PlantPromoterDB promoter information of AT1G65840.1
Summary of Gene (AT1G65840.1)
|
Overview
|
Focused view (chromosome 1: 24489173-24490372)
|
Genome position
from initiation codon TSS from cDNA TSS information AT1G65840.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT1G65840.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 2 | + | 24489784 | -389 |
| TSS peak | A | 4 | + | 24489910 | -263 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 24489784 | -389 |
| TSS clone | C | clone | + | 24489785 | -388 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCACTATAAAAA | + | 24489746 | 24489757 | -427 | -416 |
| Y Patch | TCTTCTTC | + | 24489797 | 24489804 | -376 | -369 |
| Y Patch | TTTCTCTCAT | + | 24489818 | 24489827 | -355 | -346 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTCATTT | + | 24489676 | 24489683 | -497 | -490 | |||
| AtREG657 | CGTCATTT | PPDB Motif | PLACE Motif | ||||||
| REG | AGGGGTAA | + | 24489715 | 24489722 | -458 | -451 | |||
| AtREG642 | AGGGGTAA | PPDB Motif | ACCCCT | PLACE Motif | |||||
| REG | AAAAAGCC | + | 24489753 | 24489760 | -420 | -413 | |||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||