PlantPromoterDB promoter information of AT1G66500

Summary of Gene (AT1G66500)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G66500 TAIR NCBI
Gene model	AT1G66500
Description	zinc finger (C2H2-type) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: S-locus protein-related (TAIR:AT5G43620.1); Has 275 Blast hits to 273 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 85; Plants - 35; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 24813512-24812313)

`Genome position from initiation codon` `AT1G66500.1 TSS from cDNA TSS information AT1G66500 5'->3' (-) Promoter sequence AT1G66510.1 AT1G66510.2 AT1G66510.3 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G66500

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak T 4 - 24812525 -13

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`T`	4	-	24812525	-13

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 24812650 -138

TSS clone T clone - 24812638 -126

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	24812650	-138
TSS clone	`T`	clone	-	24812638	-126

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTTCTCT - 24812489 24812497 23 15

Y Patch TCTCTTTCT - 24812557 24812565 -45 -53

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTTCTCT`	-	24812489	24812497	23	15
Y Patch	`TCTCTTTCT`	-	24812557	24812565	-45	-53
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTCACGCGGTTTAC - 24812706 24812719 -194 -207

AtREG631 TTCACGCG       Drought PPDB Motif PLACE Motif

AtREG502 TCACGCGG      Drought PPDB Motif PLACE Motif

AtREG441    ACGCGGTT    Drought PPDB Motif PLACE Motif

AtREG519       CGGTTTAC PPDB Motif AACCG(G/A) PLACE Motif

REG ACTGGGCCTATAAACCGTGGCCCAAAACACGTGACA - 24812728 24812763 -216 -251

AtREG384 ACTGGGCC                             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG410 CTGGGCCT                            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358   TGGGCCTA                           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG362    GGGCCTAT                          PPDB Motif GCCCA PLACE Motif GGGCC

AtREG487     GGCCTATA                         PPDB Motif PLACE Motif

AtREG598          ATAAACCG                    PPDB Motif AACCG(G/A) PLACE Motif

AtREG652           TAAACCGT                   PPDB Motif PLACE Motif

AtREG445                 GTGGCCCA             PPDB Motif GCCCA PLACE Motif GCCAC, GGGCC, TGGGCY

AtREG420                  TGGCCCAA            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373                   GGCCCAAA           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG529                    GCCCAAAA          PPDB Motif GCCCA PLACE Motif

AtREG590                          AACACGTG    ABA, JA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG628                           ACACGTGA   DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG583                            CACGTGAC PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG606                             ACGTGACA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG ACAGGCCCATTAA - 24812767 24812779 -255 -267

AtREG433 ACAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG370 CAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   AGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361    GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG357     GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG396      CCCATTAA PPDB Motif GCCCA PLACE Motif TTAATGG

REG AAGGCCCAATT - 24812782 24812792 -270 -280

AtREG353 AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356 AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352   GGCCCAAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG418    GCCCAATT PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTCACGCGGTTTAC`		-	24812706	24812719	-194	-207
	AtREG631	`TTCACGCG`	Drought	PPDB Motif		PLACE Motif
	AtREG502	`TCACGCGG`	Drought	PPDB Motif		PLACE Motif
	AtREG441	`ACGCGGTT`	Drought	PPDB Motif		PLACE Motif
	AtREG519	`CGGTTTAC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`ACTGGGCCTATAAACCGTGGCCCAAAACACGTGACA`		-	24812728	24812763	-216	-251
	AtREG384	`ACTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG410	`CTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG358	`TGGGCCTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG362	`GGGCCTAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG487	`GGCCTATA`		PPDB Motif		PLACE Motif
	AtREG598	`ATAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG652	`TAAACCGT`		PPDB Motif		PLACE Motif
	AtREG445	`GTGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GCCAC, GGGCC, TGGGCY`
	AtREG420	`TGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG373	`GGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG529	`GCCCAAAA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG590	`AACACGTG`	ABA, JA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG628	`ACACGTGA`	DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG583	`CACGTGAC`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG606	`ACGTGACA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`ACAGGCCCATTAA`		-	24812767	24812779	-255	-267
	AtREG433	`ACAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG370	`CAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG357	`GCCCATTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG396	`CCCATTAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`
REG	`AAGGCCCAATT`		-	24812782	24812792	-270	-280
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG418	`GCCCAATT`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 24812837 AT1G66510.1, AT1G66510.3, AT1G66510.2

TSS clone peak A clone + 24812851 AT1G66510.1, AT1G66510.3, AT1G66510.2

TSS clone A clone + 24812881 AT1G66510.3

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	24812837	AT1G66510.1, AT1G66510.3, AT1G66510.2
TSS clone peak	`A`	clone	+	24812851	AT1G66510.1, AT1G66510.3, AT1G66510.2
TSS clone	`A`	clone	+	24812881	AT1G66510.3

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None