Summary of Gene (AT1G67660.2)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT1G67660.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | + | 25363548 | -604 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 25363535 | -617 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTGAACCGGA | + | 25363321 | 25363330 | -831 | -822 | |||
AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG480 | TGAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ATTGGGCTTCATGGGCCTTAA | + | 25363430 | 25363450 | -722 | -702 | |||
AtREG402 | ATTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG476 | TGGGCTTC | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG504 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG351 | GGGCCTTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG416 | GGCCTTAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | AAAACGACA | + | 25363480 | 25363488 | -672 | -664 | |||
AtREG520 | AAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG569 | AAACGACA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |