Summary of Gene (AT1G67840)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT1G67840.2 TSS from cDNA TSS information AT1G67840 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | + | 25434102 | -54 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 25434102 | -54 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCCTC | + | 25434090 | 25434099 | -66 | -57 |
Y Patch | CGTCTTCC | + | 25434142 | 25434149 | -14 | -7 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGCCGTTTT | + | 25433931 | 25433939 | -225 | -217 | |||
AtREG524 | CGCCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG531 | GCCGTTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | TGCCGTTTA | + | 25433982 | 25433990 | -174 | -166 | |||
AtREG500 | TGCCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG613 | GCCGTTTA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | TGCCGTTTA | + | 25434040 | 25434048 | -116 | -108 | |||
AtREG500 | TGCCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG613 | GCCGTTTA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |