PlantPromoterDB promoter information of AT1G68010
Summary of Gene (AT1G68010)
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Overview
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Focused view (chromosome 1: 25492418-25493617)
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Genome position
from initiation codon AT1G68010.1 TSS from cDNA TSS information AT1G68010 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G68010
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 18 | + | 25493382 | -36 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 25493347 | -71 |
| TSS clone | A | clone | + | 25493353 | -65 |
| TSS clone | T | clone | + | 25493359 | -59 |
| TSS clone | C | clone | + | 25493361 | -57 |
| TSS clone | G | clone | + | 25493365 | -53 |
| TSS clone | T | clone | + | 25493374 | -44 |
| TSS clone | A | clone | + | 25493379 | -39 |
| TSS clone | C | clone | + | 25493380 | -38 |
| TSS clone | A | clone | + | 25493382 | -36 |
| TSS clone | A | clone | + | 25493384 | -34 |
| TSS clone | G | clone | + | 25493385 | -33 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCTCT | + | 25493357 | 25493364 | -61 | -54 |
| Y Patch | CTTTCTCT | + | 25493400 | 25493407 | -18 | -11 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCACGTCAGC | + | 25493133 | 25493143 | -285 | -275 | |||
| AtREG388 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG440 | CACGTCAG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG515 | ACGTCAGC | SA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | GACCGTTGGAT | + | 25493274 | 25493284 | -144 | -134 | |||
| AtREG553 | GACCGTTG | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||
| AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||