Summary of Gene (AT1G68520)
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Overview |
Genome position
from initiation codon AT1G68530.2 TSS from cDNA TSS information AT1G68520 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 2 | - | 25710967 | -218 |
TSS peak | G | 13 | - | 25710856 | -107 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 25710879 | -130 |
TSS clone | C | clone | - | 25710878 | -129 |
TSS clone | G | clone | - | 25710856 | -107 |
TSS clone | T | clone | - | 25710855 | -106 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTCTTT | - | 25710888 | 25710896 | -139 | -147 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAACGACA | - | 25711158 | 25711166 | -409 | -417 | |||
AtREG520 | AAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG569 | AAACGACA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 82 | - | 25714804 | AT1G68530.1, AT1G68530.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 25714807 | AT1G68530.1, AT1G68530.2 |
TSS clone | T | clone | - | 25714806 | AT1G68530.1, AT1G68530.2 |
TSS clone | A | clone | - | 25714804 | AT1G68530.1, AT1G68530.2 |
TSS clone | A | clone | - | 25714803 | AT1G68530.1, AT1G68530.2 |
TSS clone | C | clone | - | 25714800 | AT1G68530.1, AT1G68530.2 |
TSS clone | T | clone | - | 25714798 | AT1G68530.1, AT1G68530.2 |
TSS clone | A | clone | - | 25714747 | AT1G68530.1, AT1G68530.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCTTTATAT | - | 25714833 | 25714841 | AT1G68530.1, AT1G68530.2 | |
Y Patch | CTTCCCTCTCTCAT | - | 25714812 | 25714825 | AT1G68530.1, AT1G68530.2 | |
Y Patch | CTTCCTCT | - | 25714847 | 25714854 | AT1G68530.1, AT1G68530.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |