PlantPromoterDB promoter information of AT1G68530
Summary of Gene (AT1G68530)
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Overview
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Focused view (chromosome 1: 25711533-25710334)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G68530 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G68530
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 82 | - | 25714804 | -71 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 25714807 | -74 |
| TSS clone | T | clone | - | 25714806 | -73 |
| TSS clone | A | clone | - | 25714804 | -71 |
| TSS clone | A | clone | - | 25714803 | -70 |
| TSS clone | C | clone | - | 25714800 | -67 |
| TSS clone | T | clone | - | 25714798 | -65 |
| TSS clone | A | clone | - | 25714747 | -14 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTTTATAT | - | 25714833 | 25714841 | -100 | -108 |
| Y Patch | CTTCCCTCTCTCAT | - | 25714812 | 25714825 | -79 | -92 |
| Y Patch | CTTCCTCT | - | 25714847 | 25714854 | -114 | -121 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGTCATTT | - | 25714941 | 25714948 | -208 | -215 | |||
| AtREG657 | CGTCATTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 2 | - | 25710967 | AT1G68520.1 |
| TSS peak | G | 13 | - | 25710856 | AT1G68520.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 25710879 | AT1G68520.1 |
| TSS clone | C | clone | - | 25710878 | AT1G68520.1 |
| TSS clone | G | clone | - | 25710856 | AT1G68520.1 |
| TSS clone | T | clone | - | 25710855 | AT1G68520.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTTT | - | 25710888 | 25710896 | AT1G68520.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AAAACGACA | - | 25711158 | 25711166 | AT1G68520.1 | ||||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||