Summary of Gene (AT1G68530)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G68530 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 82 | - | 25714804 | -71 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 25714807 | -74 |
TSS clone | T | clone | - | 25714806 | -73 |
TSS clone | A | clone | - | 25714804 | -71 |
TSS clone | A | clone | - | 25714803 | -70 |
TSS clone | C | clone | - | 25714800 | -67 |
TSS clone | T | clone | - | 25714798 | -65 |
TSS clone | A | clone | - | 25714747 | -14 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCTTTATAT | - | 25714833 | 25714841 | -100 | -108 |
Y Patch | CTTCCCTCTCTCAT | - | 25714812 | 25714825 | -79 | -92 |
Y Patch | CTTCCTCT | - | 25714847 | 25714854 | -114 | -121 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGTCATTT | - | 25714941 | 25714948 | -208 | -215 | |||
AtREG657 | CGTCATTT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAACGACA | - | 25711158 | 25711166 | AT1G68520.1 | ||||
AtREG520 | AAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG569 | AAACGACA | PPDB Motif |   | PLACE Motif |   |