PlantPromoterDB promoter information of AT1G69340.1

Summary of Gene (AT1G69340.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G69340 TAIR NCBI
Gene model	AT1G69340.1
Description	appr-1-p processing enzyme family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Appr-1-p processing (InterPro:IPR002589); BEST Arabidopsis thaliana protein match is: appr-1-p processing enzyme family protein (TAIR:AT2G40600.1); Has 2230 Blast hits to 2187 proteins in 671 species: Archae - 43; Bacteria - 984; Metazoa - 848; Fungi - 95; Plants - 99; Viruses - 7; Other Eukaryotes - 154 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 26065298-26066497)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G69340.1 5'->3' (+) Promoter sequence AT1G69330.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G69340.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 5 + 26065802 -496

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	5	+	26065802	-496

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 26065724 -574

TSS clone T clone + 26065731 -567

TSS clone T clone + 26065754 -544

TSS clone T clone + 26065757 -541

TSS clone G clone + 26065762 -536

TSS clone G clone + 26065766 -532

TSS clone T clone + 26065789 -509

TSS clone G clone + 26065802 -496

TSS clone G clone + 26065821 -477

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	26065724	-574
TSS clone	`T`	clone	+	26065731	-567
TSS clone	`T`	clone	+	26065754	-544
TSS clone	`T`	clone	+	26065757	-541
TSS clone	`G`	clone	+	26065762	-536
TSS clone	`G`	clone	+	26065766	-532
TSS clone	`T`	clone	+	26065789	-509
TSS clone	`G`	clone	+	26065802	-496
TSS clone	`G`	clone	+	26065821	-477

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCCTC + 26065843 26065850 -455 -448

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCCTC`	+	26065843	26065850	-455	-448
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CAAAACGC + 26065520 26065527 -778 -771

AtREG585 CAAAACGC PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

REG AAACGACGAAAACGACA + 26065546 26065562 -752 -736

AtREG415 AAACGACG          PPDB Motif PLACE Motif

AtREG648 AACGACGA         PPDB Motif PLACE Motif

AtREG520         AAAACGAC PPDB Motif PLACE Motif

AtREG569          AAACGACA PPDB Motif PLACE Motif

REG CGGTTAAA + 26065634 26065641 -664 -657

AtREG645 CGGTTAAA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG TAAACGACA + 26065732 26065740 -566 -558

AtREG565 TAAACGAC PPDB Motif PLACE Motif

AtREG569 AAACGACA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CAAAACGC`		+	26065520	26065527	-778	-771
	AtREG585	`CAAAACGC`		PPDB Motif	`AAACG(C/G)`	PLACE Motif	`CAAAACGC`
REG	`AAACGACGAAAACGACA`		+	26065546	26065562	-752	-736
	AtREG415	`AAACGACG`		PPDB Motif		PLACE Motif
	AtREG648	`AACGACGA`		PPDB Motif		PLACE Motif
	AtREG520	`AAAACGAC`		PPDB Motif		PLACE Motif
	AtREG569	`AAACGACA`		PPDB Motif		PLACE Motif
REG	`CGGTTAAA`		+	26065634	26065641	-664	-657
	AtREG645	`CGGTTAAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
REG	`TAAACGACA`		+	26065732	26065740	-566	-558
	AtREG565	`TAAACGAC`		PPDB Motif		PLACE Motif
	AtREG569	`AAACGACA`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 5 - 26065476 AT1G69330.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	5	-	26065476	AT1G69330.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 26065483 AT1G69330.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	26065483	AT1G69330.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCCTCTT - 26065434 26065442 AT1G69330.1

Y Patch TTCTTCTCTTCC - 26065452 26065463 AT1G69330.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCCTCTT`	-	26065434	26065442	AT1G69330.1
Y Patch	`TTCTTCTCTTCC`	-	26065452	26065463	AT1G69330.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GCGTTTTG - 26065520 26065527 AT1G69330.1

AtREG585 GCGTTTTG PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

REG TGTCGTTTTCGTCGTTT - 26065546 26065562 AT1G69330.1

AtREG569 TGTCGTTT          PPDB Motif PLACE Motif

AtREG520 GTCGTTTT         PPDB Motif PLACE Motif

AtREG648         TCGTCGTT PPDB Motif PLACE Motif

AtREG415          CGTCGTTT PPDB Motif PLACE Motif

REG TTTAACCG - 26065634 26065641 AT1G69330.1

AtREG645 TTTAACCG PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG TGTCGTTTA - 26065732 26065740 AT1G69330.1

AtREG569 TGTCGTTT PPDB Motif PLACE Motif

AtREG565 GTCGTTTA PPDB Motif PLACE Motif