PlantPromoterDB promoter information of AT1G69740.1
Summary of Gene (AT1G69740.1)
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Overview
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Focused view (chromosome 1: 26231197-26232396)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G69740.1 5'->3' (+) Promoter sequence AT1G69730.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G69740.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | + | 26231899 | -298 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 26231804 | -393 |
| TSS clone | T | clone | + | 26231836 | -361 |
| TSS clone | A | clone | + | 26231870 | -327 |
| TSS clone | A | clone | + | 26231879 | -318 |
| TSS clone | A | clone | + | 26231915 | -282 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTTCTC | + | 26231871 | 26231878 | -326 | -319 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACAGGCCCATTAA | + | 26231724 | 26231736 | -473 | -461 | |||
| AtREG433 | ACAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG370 | CAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG357 | GCCCATTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG396 | CCCATTAA | PPDB Motif | GCCCA | PLACE Motif | TTAATGG | ||||
| REG | CAAGCCCA | + | 26231745 | 26231752 | -452 | -445 | |||
| AtREG525 | CAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | AAGCGCGTGAA | + | 26231804 | 26231814 | -393 | -383 | |||
| AtREG492 | AAGCGCGT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG631 | CGCGTGAA | Drought | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||