PlantPromoterDB promoter information of AT1G70600.1

Summary of Gene (AT1G70600.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G70600 TAIR NCBI
Gene model	AT1G70600.1
Description	structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L15 (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: RPL27AB; structural constituent of ribosome (TAIR:AT1G23290.1); Has 825 Blast hits to 825 proteins in 317 species: Archae - 121; Bacteria - 11; Metazoa - 289; Fungi - 107; Plants - 96; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 26622608-26621409)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G70600.1 5'->3' (-) Promoter sequence AT1G70610.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G70600.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 46 - 26621657 -49

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	46	-	26621657	-49

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 26621657 -49

TSS clone G clone - 26621656 -48

TSS clone C clone - 26621655 -47

TSS clone C clone - 26621654 -46

TSS clone C clone - 26621652 -44

TSS clone A clone - 26621651 -43

TSS clone A clone - 26621650 -42

TSS clone A clone - 26621643 -35

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	26621657	-49
TSS clone	`G`	clone	-	26621656	-48
TSS clone	`C`	clone	-	26621655	-47
TSS clone	`C`	clone	-	26621654	-46
TSS clone	`C`	clone	-	26621652	-44
TSS clone	`A`	clone	-	26621651	-43
TSS clone	`A`	clone	-	26621650	-42
TSS clone	`A`	clone	-	26621643	-35

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TCTTTATAAACT - 26621680 26621691 -72 -83

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TCTTTATAAACT`	-	26621680	26621691	-72	-83
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACCCTAGA - 26621724 26621731 -116 -123

AtREG658 ACCCTAGA PPDB Motif ACCCT PLACE Motif

REG AATAGCCCAAAA - 26621740 26621751 -132 -143

AtREG584 AATAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG469    AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG529     GCCCAAAA PPDB Motif GCCCA PLACE Motif

REG GGGCCTAAAGGCCCATCT - 26621765 26621782 -157 -174

AtREG360 GGGCCTAA           PPDB Motif GCCCA PLACE Motif GGGCC

AtREG430 GGCCTAAA          PPDB Motif PLACE Motif

AtREG467      TAAAGGCC      PPDB Motif PLACE Motif

AtREG359       AAAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353        AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354         AGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG403          GGCCCATC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG572           GCCCATCT PPDB Motif GCCCA PLACE Motif

REG GGCGCGTGAA - 26621838 26621847 -230 -239

AtREG486 GGCGCGTG   PPDB Motif ACGCGC PLACE Motif

AtREG395 GCGCGTGA PPDB Motif ACGCGC PLACE Motif

AtREG631   CGCGTGAA Drought PPDB Motif PLACE Motif

REG CGGCGCGT - 26621854 26621861 -246 -253

AtREG538 CGGCGCGT PPDB Motif ACGCGC PLACE Motif

REG ATAAACCGA - 26621922 26621930 -314 -322

AtREG598 ATAAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TAAACCGA PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACCCTAGA`		-	26621724	26621731	-116	-123
	AtREG658	`ACCCTAGA`		PPDB Motif	`ACCCT`	PLACE Motif
REG	`AATAGCCCAAAA`		-	26621740	26621751	-132	-143
	AtREG584	`AATAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG469	`AGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG529	`GCCCAAAA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GGGCCTAAAGGCCCATCT`		-	26621765	26621782	-157	-174
	AtREG360	`GGGCCTAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG430	`GGCCTAAA`		PPDB Motif		PLACE Motif
	AtREG467	`TAAAGGCC`		PPDB Motif		PLACE Motif
	AtREG359	`AAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG403	`GGCCCATC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG572	`GCCCATCT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GGCGCGTGAA`		-	26621838	26621847	-230	-239
	AtREG486	`GGCGCGTG`		PPDB Motif	`ACGCGC`	PLACE Motif
	AtREG395	`GCGCGTGA`		PPDB Motif	`ACGCGC`	PLACE Motif
	AtREG631	`CGCGTGAA`	Drought	PPDB Motif		PLACE Motif
REG	`CGGCGCGT`		-	26621854	26621861	-246	-253
	AtREG538	`CGGCGCGT`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`ATAAACCGA`		-	26621922	26621930	-314	-322
	AtREG598	`ATAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG514	`TAAACCGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak G clone + 26621961 AT1G70610.1

TSS clone peak T clone + 26621962 AT1G70610.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`G`	clone	+	26621961	AT1G70610.1
TSS clone peak	`T`	clone	+	26621962	AT1G70610.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AGATGGGCCTTTAGGCCC + 26621765 26621782 AT1G70610.1

AtREG572 AGATGGGC           PPDB Motif GCCCA PLACE Motif

AtREG403 GATGGGCC          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354   ATGGGCCT         PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353    TGGGCCTT        PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG359     GGGCCTTT       PPDB Motif GCCCA PLACE Motif GGGCC

AtREG467      GGCCTTTA      PPDB Motif PLACE Motif

AtREG430          TTTAGGCC PPDB Motif PLACE Motif

AtREG360           TTAGGCCC PPDB Motif GCCCA PLACE Motif GGGCC

REG TTCACGCGCC + 26621838 26621847 AT1G70610.1

AtREG631 TTCACGCG   Drought PPDB Motif PLACE Motif

AtREG395 TCACGCGC PPDB Motif ACGCGC PLACE Motif

AtREG486   CACGCGCC PPDB Motif ACGCGC PLACE Motif

REG ACGCGCCG + 26621854 26621861 AT1G70610.1

AtREG538 ACGCGCCG PPDB Motif ACGCGC PLACE Motif

REG TCGGTTTAT + 26621922 26621930 AT1G70610.1

AtREG514 TCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG598 CGGTTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG CGTGACGT + 26621955 26621962 AT1G70610.1

AtREG489 CGTGACGT ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT

REG GAAACGACGCGTTTTA + 26621980 26621995 AT1G70610.1

AtREG576 GAAACGAC         PPDB Motif PLACE Motif

AtREG415 AAACGACG        PPDB Motif PLACE Motif

AtREG439   AACGACGC       PPDB Motif PLACE Motif

AtREG633       ACGCGTTT   PPDB Motif AAACG(C/G) PLACE Motif

AtREG566        CGCGTTTT PPDB Motif AAACG(C/G) PLACE Motif

AtREG564         GCGTTTTA PPDB Motif AAACG(C/G) PLACE Motif