PlantPromoterDB promoter information of AT1G70710
Summary of Gene (AT1G70710)
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Overview
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Focused view (chromosome 1: 26663962-26662763)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G70710 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G70710
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 85 | - | 26663000 | -38 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 26663010 | -48 |
| TSS clone | C | clone | - | 26663003 | -41 |
| TSS clone | T | clone | - | 26663002 | -40 |
| TSS clone | A | clone | - | 26663000 | -38 |
| TSS clone | C | clone | - | 26662999 | -37 |
| TSS clone | T | clone | - | 26662994 | -32 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATAAAGA | - | 26663035 | 26663042 | -73 | -80 |
| Y Patch | CCTTCTCTCTCTC | - | 26663001 | 26663013 | -39 | -51 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCCACGTGGT | - | 26663089 | 26663098 | -127 | -136 | |||
| AtREG408 | TCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| AtREG544 | CACGTGGT | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | AACCCGGT | - | 26663171 | 26663178 | -209 | -216 | |||
| AtREG516 | AACCCGGT | PPDB Motif | PLACE Motif | ||||||
| REG | ACCGGTTAT | - | 26663182 | 26663190 | -220 | -228 | |||
| AtREG503 | ACCGGTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG548 | CCGGTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||