Summary of Gene (AT1G71030)
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Overview |
Genome position
from initiation codon AT1G71020.2 TSS from cDNA TSS information AT1G71030 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 26 | - | 26796286 | -60 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 26796286 | -60 |
TSS clone | T | clone | - | 26796282 | -56 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCCTATATATC | - | 26796310 | 26796320 | -84 | -94 |
Y Patch | TTTCTTCTC | - | 26796299 | 26796307 | -73 | -81 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTGGGACC | - | 26796438 | 26796445 | -212 | -219 | |||
AtREG406 | GTGGGACC | PPDB Motif | GGGACCC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 8 | - | 26793174 | AT1G71020.1, AT1G71020.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | - | 26793173 | AT1G71020.1, AT1G71020.2 |
TSS clone | A | clone | - | 26793171 | AT1G71020.1, AT1G71020.2 |
TSS clone | G | clone | - | 26793166 | AT1G71020.1, AT1G71020.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGTGTCGT | - | 26793252 | 26793259 | AT1G71020.1, AT1G71020.2 | ||||
AtREG599 | GGTGTCGT | PPDB Motif |   | PLACE Motif |   |