PlantPromoterDB promoter information of AT1G72160.1

Summary of Gene (AT1G72160.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G72160 TAIR NCBI
Gene model	AT1G72160.1
Description	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 3452 Blast hits to 2934 proteins in 279 species: Archae - 35; Bacteria - 208; Metazoa - 1309; Fungi - 627; Plants - 480; Viruses - 12; Other Eukaryotes - 781 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 27156609-27155410)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G72160.1 5'->3' (-) Promoter sequence AT1G72170.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G72160.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 47 - 27155648 -39

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	47	-	27155648	-39

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 27155648 -39

TSS clone G clone - 27155647 -38

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	27155648	-39
TSS clone	`G`	clone	-	27155647	-38

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TTTCTATAAACC - 27155672 27155683 -63 -74

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TTTCTATAAACC`	-	27155672	27155683	-63	-74
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GACGACGTC - 27155719 27155727 -110 -118

AtREG526 GACGACGT PPDB Motif ACGT PLACE Motif ACGT

AtREG431 ACGACGTC PPDB Motif ACGT PLACE Motif ACGT

REG ATACCCTT - 27155738 27155745 -129 -136

AtREG623 ATACCCTT PPDB Motif ACCCT PLACE Motif

REG AAAACCGGTTCG - 27155761 27155772 -152 -163

AtREG542 AAAACCGG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG436 AAACCGGT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG528    ACCGGTTC PPDB Motif AACCG(G/A) PLACE Motif

AtREG423     CCGGTTCG PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GACGACGTC`		-	27155719	27155727	-110	-118
	AtREG526	`GACGACGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
	AtREG431	`ACGACGTC`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
REG	`ATACCCTT`		-	27155738	27155745	-129	-136
	AtREG623	`ATACCCTT`		PPDB Motif	`ACCCT`	PLACE Motif
REG	`AAAACCGGTTCG`		-	27155761	27155772	-152	-163
	AtREG542	`AAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG436	`AAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG528	`ACCGGTTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG423	`CCGGTTCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 2 + 27156335 AT1G72170.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	2	+	27156335	AT1G72170.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone C clone + 27156336 AT1G72170.1

TSS clone G clone + 27156344 AT1G72170.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`C`	clone	+	27156336	AT1G72170.1
TSS clone	`G`	clone	+	27156344	AT1G72170.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TACGGCCCATCA + 27156246 27156257 AT1G72170.1

AtREG499 TACGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG368 ACGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG380   CGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG403    GGCCCATC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG635     GCCCATCA PPDB Motif GCCCA PLACE Motif

REG ATATTGGGCCTAAGTTAAGGCC + 27156265 27156286 AT1G72170.1

AtREG509 ATATTGGG               PPDB Motif PLACE Motif

AtREG355 TATTGGGC              PPDB Motif GCCCA PLACE Motif

AtREG352   ATTGGGCC             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    TTGGGCCT            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG358     TGGGCCTA           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG360      GGGCCTAA          PPDB Motif GCCCA PLACE Motif GGGCC

AtREG563       GGCCTAAG         PPDB Motif PLACE Motif

AtREG416               TTAAGGCC PPDB Motif PLACE Motif