Summary of Gene (AT1G72260.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G72260.1 5'->3' (-) Promoter sequence AT1G72240.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 27199430 | -72 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 27199437 | -79 |
TSS clone | A | clone | - | 27199436 | -78 |
TSS clone | T | clone | - | 27199435 | -77 |
TSS clone | A | clone | - | 27199432 | -74 |
TSS clone | C | clone | - | 27199429 | -71 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGTTAAA | - | 27199560 | 27199567 | -202 | -209 | |||
AtREG610 | CCGTTAAA | PPDB Motif |   | PLACE Motif | YAACKG, CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 2 | + | 27190201 | AT1G72240.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TGTGGGCCTAT | + | 27189988 | 27189998 | AT1G72240.1 | ||||
AtREG612 | TGTGGGCC | DREB1Aox | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | |||
AtREG482 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG362 | GGGCCTAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |