PlantPromoterDB promoter information of AT1G72370.1
Summary of Gene (AT1G72370.1)
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Overview
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Focused view (chromosome 1: 27245842-27244643)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G72370.1 5'->3' (-) Promoter sequence AT1G72390.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G72370.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 51 | - | 27244907 | -65 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 27244927 | -85 |
| TSS clone | T | clone | - | 27244926 | -84 |
| TSS clone | G | clone | - | 27244924 | -82 |
| TSS clone | C | clone | - | 27244923 | -81 |
| TSS clone | C | clone | - | 27244922 | -80 |
| TSS clone | T | clone | - | 27244921 | -79 |
| TSS clone | C | clone | - | 27244920 | -78 |
| TSS clone | T | clone | - | 27244918 | -76 |
| TSS clone | T | clone | - | 27244915 | -73 |
| TSS clone | T | clone | - | 27244913 | -71 |
| TSS clone | T | clone | - | 27244909 | -67 |
| TSS clone | A | clone | - | 27244907 | -65 |
| TSS clone | C | clone | - | 27244906 | -64 |
| TSS clone | T | clone | - | 27244905 | -63 |
| TSS clone | G | clone | - | 27244900 | -58 |
| TSS clone | G | clone | - | 27244881 | -39 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCCTTATAA | - | 27244935 | 27244943 | -93 | -101 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTCGGTTTAA | - | 27245069 | 27245078 | -227 | -236 | |||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 8 | + | 27245142 | AT1G72390.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTTCCTTTCTCTTCC | + | 27245157 | 27245176 | AT1G72390.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TTAAACCGAA | + | 27245069 | 27245078 | AT1G72390.1 | ||||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||