PlantPromoterDB promoter information of AT1G73080
Summary of Gene (AT1G73080)
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Overview
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Focused view (chromosome 1: 27483513-27484712)
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Genome position
from initiation codon AT1G73080.1 TSS from cDNA TSS information AT1G73080 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G73080
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 27484380 | -133 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 27484360 | -153 |
| TSS clone | T | clone | + | 27484410 | -103 |
| TSS clone | A | clone | + | 27484426 | -87 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTTCTCTCTCTCAT | + | 27484408 | 27484425 | -105 | -88 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAACGACATCG | + | 27484151 | 27484162 | -362 | -351 | |||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
| AtREG630 | CGACATCG | PPDB Motif | PLACE Motif | ||||||
| REG | ACCACGTGTG | + | 27484228 | 27484237 | -285 | -276 | |||
| AtREG544 | ACCACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG460 | CACGTGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| REG | AAACGGCGT | + | 27484270 | 27484278 | -243 | -235 | |||
| AtREG524 | AAACGGCG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG497 | AACGGCGT | PPDB Motif | AAACG(C/G), CCAACGG | PLACE Motif | |||||
| REG | AAAACGCGT | + | 27484287 | 27484295 | -226 | -218 | |||
| AtREG566 | AAAACGCG | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG633 | AAACGCGT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||